Article

Structural and dynamic insights into ligand recognition and activation of somatostatin receptor 3

Xue Chen1,2, Sen Guo1,2, Ying-ge Li1,2, Ao-kun Liu1,2, Jian Kuang1,2, Pan Shi1,2, Lu Yu1,2, Fan Yang3, Chang-lin Tian1,2,3,4
1 School of Life Sciences, Division of Life Sciences and Medicine, Joint Center for Biological Analytical Chemistry, the First Affiliated Hospital of USTC, University of Science and Technology of China, Hefei 230026, China
2 Anhui Engineering Laboratory of Peptide Drug, University of Science and Technology of China, Hefei 230026, China
3 School of Chemistry and Chemical Engineering, ZhangJiang Institute for Advanced Study, Shanghai Jiao Tong University, Shanghai 201204, China
4 High Magnetic Field Laboratory, Hefei Institute of Physical Science, Chinese Academy of Sciences, Hefei 230030, China
Correspondence to: Lu Yu: luyuesr@ustc.edu.cn, Fan Yang: f_yang@sjtu.edu.cn, Chang-lin Tian: cltian@ustc.edu.cn,
DOI: 10.1038/s41401-025-01740-2
Received: 20 October 2025
Accepted: 16 December 2025
Advance online: 11 February 2026

Abstract

Somatostatin receptor 3 (SSTR3) exerts critical biological functions such as negatively regulating hormone release and cell proliferation, making it a promising therapeutic target for endocrine disorders and nonfunctioning pituitary tumors. However, the development of more effective and safer somatostatinergic therapies is limited due to a lack of molecular understanding of the ligand recognition and conformational dynamics of SSTR3. Here, we report the cryo-EM structure of the human SSTR3-Gi complex bound to octreotide at 2.90 Å resolution. Our structures reveal the molecular mechanisms of ligand recognition and receptor activation. Furthermore, mutagenesis analyses reveal that residue R203⁵·³⁵ of SSTR3 and F294⁷·³⁵ of SSTR2 play critical roles in mediating the subtype selectivity of octreotide. Using electron paramagnetic resonance spectroscopy, we have investigated the conformational dynamics of SSTR3. Our findings demonstrate that during ligand binding or G protein coupling, the labeled site on transmembrane helix 6 (TM6) of SSTR3 progressively becomes exposed to the extracellular environment and exhibits increased dynamical characteristics. Our work provides structural and dynamic insights that will facilitate the rational design of subtype-selective drugs targeting SSTRs and possessing improved therapeutic profiles.

Keywords: Somatostatin receptor 3; octreotide; cryo-EM; electron paramagnetic resonance spectroscopy

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